RnoEX0023124 @ rn6
Exon Skipping
Gene
ENSRNOG00000007657 | Col27a1
Description
collagen type XXVII alpha 1 chain [Source:RGD Symbol;Acc:735115]
Coordinates
chr5:79153519-79155843:+
Coord C1 exon
chr5:79153519-79153572
Coord A exon
chr5:79155598-79155654
Coord C2 exon
chr5:79155790-79155843
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTGTGGTGTCCACAGGGG
3' ss Score
9.32
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGGCATAAAGGCATCACGGGACCTCTCGGGCCTCCCGGGCCCAAAGGCGAGAAG
Seq A exon
GGGGAACAGGGCGAGGATGGCAAGACTGAGGGGGCCCCCGGGCCACCAGGAGAGCGG
Seq C2 exon
GGTCCTGTGGGTGATCGAGGAGACCGTGGGGAGCCAGGCGACCCTGGATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007657-'58-56,'58-55,59-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=PD(14.8=47.4),PF0139113=Collagen=PU(16.1=52.6)
C2:
PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATAAAGGCATCACGGG
R:
AGGGTATCCAGGGTCGCCT
Band lengths:
108-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]