GgaEX6014977 @ galGal3
Exon Skipping
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5406539-5411353:+
Coord C1 exon
chr17:5406539-5406592
Coord A exon
chr17:5411084-5411140
Coord C2 exon
chr17:5411300-5411353
Length
57 bp
Sequences
Splice sites
3' ss Seq
GATGGCGTTTTCACTCACAGGGA
3' ss Score
9.35
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGGCACGCAGGACCACCAGGGCCAATTGGACCACCGGGGCCGAAGGGTGAGAAG
Seq A exon
GGAGAACAAGGTGATGACGGGAAGGTGGAAGGCCCACAGGGACCACCCGGAGACAGA
Seq C2 exon
GGTCCTGTTGGTGACAGAGGAGATCGAGGGGAGCCCGGAGACCCTGGTTATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'58-50,'58-49,59-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(13.3=42.1),PF0139113=Collagen=PU(14.8=47.4)
C2:
PF0139113=Collagen=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCAGGACCACCAGGG
R:
AGGATAACCAGGGTCTCCGG
Band lengths:
105-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]