GgaEX6014977 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4768377-4773191:+
Coord C1 exon
chr17:4768377-4768430
Coord A exon
chr17:4772922-4772978
Coord C2 exon
chr17:4773138-4773191
Length
57 bp
Sequences
Splice sites
3' ss Seq
GATGGCGTTTTCACTCACAGGGA
3' ss Score
9.35
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGGCACGCAGGACCACCAGGGCCAATTGGACCACCGGGGCCGAAGGGTGAGAAG
Seq A exon
GGAGAACAAGGTGATGACGGGAAGGTGGAAGGCCCACAGGGACCACCCGGAGACAGA
Seq C2 exon
GGTCCTGTTGGTGACAGAGGAGATCGAGGGGAGCCCGGAGACCCTGGTTATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'56-45,'56-44,58-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(13.3=42.1),PF0139113=Collagen=PU(16.1=52.6)
C2:
PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCAGGACCACCAGGG
R:
AGGATAACCAGGGTCTCCGG
Band lengths:
105-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]