MmuEX6093884 @ mm9
Exon Skipping
Gene
ENSMUSG00000045672 | Col27a1
Description
collagen, type XXVII, alpha 1 [Source:MGI Symbol;Acc:MGI:2672118]
Coordinates
chr4:62976596-62978574:+
Coord C1 exon
chr4:62976596-62976649
Coord A exon
chr4:62978362-62978418
Coord C2 exon
chr4:62978521-62978574
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTGTGGTGTCCACAGGGG
3' ss Score
9.32
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGACACAAAGGCATCACAGGACCCCTCGGGCCTCCCGGGCCCAAAGGCGAGAAG
Seq A exon
GGGGACCAGGGCGAGGATGGCAAGACCGAGGGGCCCCCTGGGCCACCAGGAGATCGG
Seq C2 exon
GGTCCTGTGGGTGATCGAGGAGACCGTGGGGAGCCAGGCGACCCTGGATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045672-'49-49,'49-48,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.6=100)
A:
PF0139113=Collagen=PD(14.1=47.4),PF0139113=Collagen=PU(16.1=52.6)
C2:
PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAAAGGCATCACAGGA
R:
AGGGTATCCAGGGTCGCCT
Band lengths:
108-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: