BtaEX0028371 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4613367-4624172:+
Coord C1 exon
chr6:4613367-4613446
Coord A exon
chr6:4622428-4622512
Coord C2 exon
chr6:4624015-4624172
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTTAATTTACCCTTTGGCAGATT
3' ss Score
5.69
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGGATCCTAAGAAAAAACTCATATGTTCAGTGTGCAATAAAAAGTGTTCTTCAGCATCAAGCCTACAGGAGCATAGGAAG
Seq A exon
ATTCATGAAATATTTGATTGTCAAGAATGTATGAAGAAATTCATTTCAGCTAATCAGCTAAAGCGTCATATGATCACCCACTCAG
Seq C2 exon
AAAAACGACCCTATAATTGTGAGATTTGTAATAAATCTTTCAAGAGGCTTGACCAAGTGGGTGCCCACAAAGTGATACACAGTGAAGATAAACCTTACAAGTGCAAGCTCTGTGGAAAGGGGTTTGCTCACAGAAATGTTTACAAGAATCACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX3-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.038
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(87.0=74.1),PF144711=DUF4428=PU(38.0=70.4)
A:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF144711=DUF4428=PD(2.0=1.9),PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAGCCTACAGGAGCAT
R:
AACATTTCTGTGAGCAAACCCCT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development