GgaEX6035035 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55807754-55814756:+
Coord C1 exon
chr4:55807754-55807833
Coord A exon
chr4:55813232-55813316
Coord C2 exon
chr4:55814599-55814756
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTAAACACTCATTTTGCAGGTT
3' ss Score
7.95
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAATTCTAGGAAAAAGCTGACGTGTTCAGTGTGCAATAAGAAATGTTCCTCAACAACAAATCTCCAGGAGCATCGAAAG
Seq A exon
GTTCATGAGACCTTTGAGTGTCAGGAATGTGACAAGAGATTTATTTCAGCTAACCAGCTAAAACGCCATATGATAACTCATTCAG
Seq C2 exon
AAAAACGCCCCTACACCTGCGAGGTTTGCAATAAGTCCTTCAAACGACTTGATCAAGTGACTGCACACAAAATAATACACAGTGAAGATAAACCTTATAAATGCAAGCTTTGTGGAAAGGGATTTGCCCACAGAAATGTTTACAAGAATCACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'8-9,'8-8,10-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.052 C2=0.019
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=77.8)
A:
PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTTCAGTGTGCAATAAGA
R:
TCCCTTTCCACAAAGCTTGCA
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]