GgaEX6035035 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53681449-53693626:+
Coord C1 exon
chr4:53681449-53681528
Coord A exon
chr4:53686928-53687012
Coord C2 exon
chr4:53693535-53693626
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTAAACACTCATTTTGCAGGTT
3' ss Score
7.95
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAATTCTAGGAAAAAGCTGACGTGTTCAGTGTGCAATAAGAAATGTTCCTCAACAACAAATCTCCAGGAGCATCGAAAG
Seq A exon
GTTCATGAGACCTTTGAGTGTCAGGAATGTGACAAGAGATTTATTTCAGCTAACCAGCTAAAACGCCATATGATAACTCATTCAG
Seq C2 exon
AACAGGTACAGCACAGACATCAGCACTGCGAGCTTCCCCACAGTGTCTCGTCAATATGTCTCAACCCTGTTCTGGAGGAACCACCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'9-12,'9-10,11-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.080 C2=0.075
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=77.8)
A:
PF121713=zf-C2H2_jaz=PU(75.8=86.2)
C2:
PF121713=zf-C2H2_jaz=PD(21.2=22.6),PF134651=zf-H2C2_2=PU(4.8=3.2)
Main Skipping Isoform:
ENSGALT00000019510fB2110
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGGAAAAAGCTGACGTGTTCA
R:
CTCAACAGGTGGTTCCTCCA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]