BtaEX0032093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19140379-19146632:+
Coord C1 exon
chr12:19140379-19140472
Coord A exon
chr12:19142574-19142899
Coord C2 exon
chr12:19146544-19146632
Length
326 bp
Sequences
Splice sites
3' ss Seq
TCTTCCAAAATGTTTATTAGAGG
3' ss Score
2.75
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGATTTACTTCCTCAGAGTCTGTCACCTCAGAAGATAATGGGGAACTTAATCCAGCTCAAGTACATCTGAACTCTAAAGCCAAGGAAATGAGAA
Seq A exon
AGGACTCAAGCTCAAACCAAGTTGAAGATTGTAAAGACAGCCCTGTGATTGATTCCGATGTGATAGATATAACCAAGTGTAGAGAAGACACTCCGCCAGGGGACACATGTCACCAAGCAGTCACACTGGATAACAAGAATGAGGTTCAAATACAAAAGCCCCAAGAGGAAAAATCTCCAGCATGTCAAAACCATCAGGTCTTTTGTGGTAAAGAGTTACCGAATGAAACCAAGGATGCTTCATCTGATTCTCTAGAGAAGTTCAATAAAGGGAATGTGTTTCTATTGGATGCCACAAAAGAAGGAAATGTGGGCCGCTTCCTTAAT
Seq C2 exon
CATAGTTGTTGCCCAAATCTTTTGGTACAGAATGTTTTTGTAGAAACACATGACAGAAATTTTCCCTTGGTGGCGTTCTTCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.486 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.0=100)
A:
PF0085623=SET=FE(34.8=100)
C2:
PF0085623=SET=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development