MmuEX0041866 @ mm9
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60025483-60031021:-
Coord C1 exon
chr14:60030928-60031021
Coord A exon
chr14:60028015-60028355
Coord C2 exon
chr14:60025483-60025571
Length
341 bp
Sequences
Splice sites
3' ss Seq
TTCCTAACAATGTCTACTAGAGG
3' ss Score
2.87
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGATTTGTTTGCTCAGATTCTGCCGCCCCAGAAGATAAGAATGGATTTAAACCAGCTCAAGAACACGTGAACTCTGAAGCTAGGAGAGCTCACG
Seq A exon
AGGACTTAAGTTCAAACCCAGCTGGAGATTCTGAAGACACACAGCTGACTGAATCAGACGTGATAGATATAACTGCAAGTAGAGAAGACTCTGCCCCAGCATACAGGTGTAAGCACGCAACCATAGTGGATCGTAAGGACACTAAACAGGTGCTTGAAGTCCCAGGAAAGAAGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGCCTTGTGTGATGAGGAGCTGCCAAGTGAGAGGACAAAGATTCCATCTGCTTCCCTGATGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTCAAT
Seq C2 exon
CATAGTTGCTGTCCAAATCTCTGGGTGCAGAATGTTTTTGTAGAAACACATGACAGGAATTTCCCATTGGTGGCCTTCTTCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-'16-16,'16-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.588 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.1=100)
A:
PF0085623=SET=FE(36.7=100)
C2:
PF0085623=SET=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTGTTTGCTCAGATTCTGCC
R:
CTGTTGGTGAAGAAGGCCAC
Band lengths:
183-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: