DreEX6072109 @ danRer10
Exon Skipping
Gene
ENSDARG00000041243 | setdb1a
Description
SET domain, bifurcated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2421]
Coordinates
chr19:9221492-9222051:+
Coord C1 exon
chr19:9221492-9221590
Coord A exon
chr19:9221683-9221876
Coord C2 exon
chr19:9221963-9222051
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTGTAATTTGTGTCATCAGGAC
3' ss Score
8.06
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
TCCATGACAAACCTTTAGGTGAGAGAAAACTGCCAAATAAACCACATGAAACACCGAAAGATACTCAGAAGAAAATTAGTGAACTAAGGAAAAATGACG
Seq A exon
GACAAGAGAGCTCAGGCCCGAAGCGATGCTTTGCCATAAAGTCATTCCAGAGAAGAGTAAAACCACTAGAAAGCACTGAAGCACAGAAAGAAAAAACTAAAACTCCCAAAAACACACGCGGACTGTTCAACGATGAGGACGCTTGTTACATCATTGATGCTCGGCAAGAGGGAAACCTCGGCCGTTATATAAAC
Seq C2 exon
CATAGCTGCAGCCCCAATTTATTTGTCCAGAACGTCTTTGTGGACACACACGACCTCCGCTTTCCATGGGTGGCTTTCTTTGCTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041243-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.354 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(13.2=100)
A:
PF0085623=SET=FE(25.6=100)
C2:
PF0085623=SET=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAGGTGAGAGAAAACTGCCA
R:
GCTAGCAAAGAAAGCCACCCA
Band lengths:
175-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]