RnoEX0079924 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39715651-39720980:-
Coord C1 exon
chr15:39720887-39720980
Coord A exon
chr15:39718137-39718477
Coord C2 exon
chr15:39715651-39715739
Length
341 bp
Sequences
Splice sites
3' ss Seq
TTCCTAACAATGTCTACTAGAGG
3' ss Score
2.87
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGATTCGTTTGCTCATATTCTGCTGCCCCAGAAGAGAAGAATGGATTTAAACCAGCTCAAGAACACCTGGACTCTAAAGCTAGGAGAGCTCACG
Seq A exon
AGGACTTAAGTTCAAGCCAAGTTGGATATTCTGAAGACAAGCAGCTGACTGAATCAGATGTGATAGATACAACTACCAGTAGAGAAGACACTTCCCCAGCATACGGGTGTAAGCACGCAGCCATATTGAATAGTAAGAACACTAAAAAAGTGCTTGAAGTCCCCGTAAAAACGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGTCTCGTGTGGTGAGGAGCTGGCAAGTGAAAGGACAAAGATTCCATCTGCTTCCCTGGTGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTTAAT
Seq C2 exon
CACAGTTGCTACCCAAATCTCTGGGTGCAGAACGTGTTTGTAGAAACCCATGACAGGAATTTCCCATTGGCGGCCTTCTTCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680-'20-24,'20-22,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.695 A=0.579 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(18.2=84.4)
A:
PF0085623=SET=FE(36.7=100)
C2:
PF0085623=SET=FE(9.4=100)
Main Skipping Isoform:
ENSRNOT00000074587fB13232
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCGTTTGCTCATATTCTGCTG
R:
CTGTTGGTGAAGAAGGCCGC
Band lengths:
183-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]