GgaEX1052020 @ galGal3
Exon Skipping
Gene
ENSGALG00000017006 | F1N8V8_CHICK
Description
NA
Coordinates
chr1:173518199-173520629:+
Coord C1 exon
chr1:173518199-173518308
Coord A exon
chr1:173519094-173519425
Coord C2 exon
chr1:173520541-173520629
Length
332 bp
Sequences
Splice sites
3' ss Seq
ACTTAGCCATCAATTGCCAGGAT
3' ss Score
2.32
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TTTCAAGGAAGTCGATACACTGGTGCACAGTGCTGGCTCAGATGAAGATAATAGTTCTCAGCCTCAGCAGTCAAGTGAAACAGAACTGACAAGTGGGACAAACAAAGAAA
Seq A exon
GATCCTCCCAGAAGCAGAGGGTAGAAGACCTGGTGGAAGTTGGACAGACGGAGCCTGCTGAAATGGACAGTGCTGAATGCAGAAGGAAGAGTCTGTCTCTGAAGGGTGTTGCTTGTGGCAGATCAGACGTGCTGAACGATAAATACGTTGTGAAGCCATCCACAAAGGTTCTACAAAAAGCTGACTGCGTAGAGGAAGCTCACAGACAGGCAAAACAAGGCATATTTTGTGTGGAAGCAGACGGTGACAGAACGCTTCTGAAGAATGCTAACAATGAAAATATCTATATACTAGATGCCACAAAAGAAGGAAATGTGGGTCGTTTTCTTAAT
Seq C2 exon
CACAGCTGCTGCCCCAATCTCTTTGCACAGAGTGTGTTTGTAGAGACGCACAACAGAAGTTTCCCATGGGTTGCATTCTTCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006-'31-24,'31-21,33-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.221 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(17.6=100)
A:
PF0085623=SET=PD(18.1=34.2),PF0085623=SET=PU(38.9=25.2)
C2:
PF0085623=SET=FE(40.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGGAAGTCGATACACTGGTG
R:
CTGTTTGTGAAGAATGCAACCCA
Band lengths:
198-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]