GgaEX1052020 @ galGal4
Exon Skipping
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168517597-168520020:+
Coord C1 exon
chr1:168517597-168517699
Coord A exon
chr1:168518485-168518816
Coord C2 exon
chr1:168519932-168520020
Length
332 bp
Sequences
Splice sites
3' ss Seq
ACTTAGCCATCAATTGCCAGGAT
3' ss Score
2.32
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAAGTCGATACACTGGTGCACAGTGCTGGCTCAGATGAAGATAATAGTTCTCAGCCTCAGCAGTCAAGTGAAACAGAACTGACAAGTGGGACAAACAAAGAAA
Seq A exon
GATCCTCCCAGAAGCAGAGGGTAGAAGACCTGGTGGAAGTTGGACAGACGGAGCCTGCTGAAATGGACAGTGCTGAATGCAGAAGGAAGAGTCTGTCTCTGAAGGGTGTTGCTTGTGGCAGATCAGACGTGCTGAACGATAAATACGTTGTGAAGCCATCCACAAAGGTTCTACAAAAAGCTGACTGCGTAGAGGAAGCTCACAGACAGGCAAAACAAGGCATATTTTGTGTGGAAGCAGACGGTGACAGAACGCTTCTGAAGAATGCTAACAATGAAAATATCTATATACTAGATGCCACAAAAGAAGGAAATGTGGGTCGTTTTCTTAAT
Seq C2 exon
CACAGCTGCTGCCCCAATCTCTTTGCACAGAGTGTGTTTGTAGAGACGCACAACAGAAGTTTCCCATGGGTTGCATTCTTCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.261 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(15.6=100)
A:
PF0085623=SET=PD(28.4=55.9),PF0085623=SET=PU(39.7=26.1)
C2:
PF0085623=SET=FE(39.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCGATACACTGGTGCACA
R:
TGTTTGTGAAGAATGCAACCCA
Band lengths:
190-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]