BtaEX6004932 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:16123579-16173828:-
Coord C1 exon
chrX:16173652-16173828
Coord A exon
chrX:16141395-16141559
Coord C2 exon
chrX:16123579-16123773
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATAAAATCCTTCATTTTTAGGGC
3' ss Score
8.7
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGACGGCTTTCAGCATTGCCCTGGTTCGTGATGCCAAGTGGCTGACTTTGGAAGTGTGTAGAGAATTTCAGAGAGGAACCTGCTCTCGAGCTGATGCAGATTGCAAGTTTGCCCATCCGCCAAGAATTTGCCATGTGGAAAATGGTCGCGTGGTGGCTTGTTTTGATTCTCTAAAG
Seq A exon
GGCCGGTGTGCCAGAGAGAACTGCAAGTACCTTCACCCTCCTCCACATTTGAAGACGCAGCTGGAAATTAATGGACGGAACAATCTGATTCAACAAAAGAGTGCCGCCGCCATGTTCGCCCAGCACATGCAGTTTATGTTCCAAAATGCTCAGATGCCATCAGTT
Seq C2 exon
AATTCTTTTCCTGTGAATCCTGCAATTGCAGCTAATCCTGCCATGGCTTACAATCCTTACTTACCTCATCATCCTGGGATGGGCCTGGTCCCCGCCGAACTGGTACAAAACGCACCTGTTCTGATTTCTGGAAACCCACCTCTGCCACTGCCAGGGCCTGTTGGTCCAAAACCGATACGTTCAGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088-'0-1,'0-0,7-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.144 A=0.436 C2=0.769
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=42.4)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGGAACCTGCTCTCGA
R:
GCAGAGGTGGGTTTCCAGAAA
Band lengths:
253-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]