MmuEX6044331 @ mm9
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:48484606-48559009:-
Coord C1 exon
chrX:48558951-48559009
Coord A exon
chrX:48492381-48492545
Coord C2 exon
chrX:48484606-48484797
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCTAAATTTTTTGCTACTAGGGT
3' ss Score
6.59
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GAGTTCCTGCGCGTGGCGTCCTCGCAGCGAGACGCCGCTGGAGTCGCTCACTCGGAGAG
Seq A exon
GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCGCACTTAAAGTCGCAGCTAGAAGTTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCACATGCAACTCATGCTGCAGAACGCTCAGATGTCATCTCTT
Seq C2 exon
GCGTCTTTTCCTATGAATCCATCACTTGCAGCTAATCCTGCCATGGCTTTCAATCCTTACATGACTCATCCTGGCATGGGCCTGGTTCCTGCTGAGCTTTTACCAAATGGTCCGGTTCTGATTTCTGGAAACCCTCCTCTTGCACTGCCAGGAGTTCCTGGTCCAAAGCCAATTCGTACAGATAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-'1-9,'1-7,13-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.736 C2=0.835
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGGAGTCGCTCACT
R:
CCAGTCTATCTGTACGAATTGGCT
Band lengths:
215-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: