RnoEX0053027 @ rn6
Exon Skipping
Gene
ENSRNOG00000002487 | Mbnl3
Description
muscleblind-like splicing regulator 3 [Source:RGD Symbol;Acc:1565834]
Coordinates
chrX:138395413-138412623:-
Coord C1 exon
chrX:138412523-138412623
Coord A exon
chrX:138404610-138404774
Coord C2 exon
chrX:138395413-138395604
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATCTAAATTTTTGCTATTAGGGT
3' ss Score
6.59
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TAGCTGATTGGTGTGATGCTTATGGTGGGAGGAGCTACGGAGAGAACAAATTGCCTTCTCCAGCAGTCAAGTTCCTTCAGTCCCTTCTTGCAGCTGGTCAG
Seq A exon
GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCCCACTTAAAGTCGCAGCTAGAAATTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCAGATGCAGCTTATGCTCCAGAATGCTCAGATGTCATCTCTT
Seq C2 exon
GCATCTTTTCCTATGAATCCATCACTGGCAGCTAATCCTACCATGGCTTTCAATCCCTACATACCTCATCCTGGGATGGGCCTGGTTCCTGCTGAGCTTTTACCAAATGGTCCGGTTCTGATTTCTGGAAACCCACCTCTTGCACTGTCAGGAGTTCCTGGTCCAAAACCACCTCGTACGGATAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002487-'3-4,'3-3,6-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTTATGGTGGGAGGAGC
R:
ACTCCTGACAGTGCAAGAGGT
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]