DreEX6058290 @ danRer10
Exon Skipping
Gene
ENSDARG00000016085 | mbnl3
Description
muscleblind-like splicing regulator 3 [Source:ZFIN;Acc:ZDB-GENE-081002-3]
Coordinates
chr14:30686221-30719766:-
Coord C1 exon
chr14:30718665-30719766
Coord A exon
chr14:30686526-30686690
Coord C2 exon
chr14:30686221-30686421
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCAACCCCTCTCAGGGA
3' ss Score
8.05
5' ss Seq
ATAGTGAGA
5' ss Score
1.69
Exon sequences
Seq C1 exon
CTCTACATTTAATGCTTTGTTTTTCTGGACGACAGCCGAAGATGCACCGCAGCATGTCACAGTGACCTACCCCACCTCAGTCCTCTGGATTCCTCACTCTCCCTACCTGACTTTAAGCTGATCTCATATTCTTGTCATACTTCCGCTTTGGTTGGTCGGTCACTAGAGTATGCTCCCTTTCTGTTTGTGAGAGTTTGGTTTTTGTTTCTAGACTAAACTGTGGATCTCCTTGCCACTGTGCTGATTTTTTGAAGCCTTTGTGCTTTATCACGCCTGGCTGCCCCACCCCAGGCCTCTGCTCACCCACCGCTTGCAGAGGGACCGCCATGGCTGTCAATGTGACCATGGGCCGCGACACCAAGTGGCTGACGCTGGAGGTCTGCAGAGAGTTCCAGAGAGGAACTTGCTCACGCTCGGACAGCGAATGCAAGTTTGCTCACCCCTCTCGAACCTGCCATGTGGAGAACGGCCGCGTCATCGCCTGCTTCGACTCACTCAAG
Seq A exon
GGACGCTGTACACGTGATAACTGTAAGTACCTGCATCCTCCGCCTCATCTCAAGACCCAGCTGGAGATAAACGGCAGGAACAACCTGATCCAGCAGAAGACCGCAGCCGCCATGCTGGCCCAGCAGATGCAGTTCATGCTGCCTGGAGCTCAGCTGCAGCCCATA
Seq C2 exon
ACCTCTTTTCCAGTAACGCCTTCGTTGGCCAACAGTCCGAGCATGGCTTTCAGCCCGTACCTGAGCCACGTGAGCCCGGGCATCAGTCTCATGCCCGAGCTTCTGCCCAGCGCCCCCGTGCTGGTCCCGGGGAGCCCCACCGGCATCACCATGGGCAACGGAAATTCAACACAGAAACATGTTCGCACAGACAAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016085-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.140 A=0.447 C2=0.416
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAGCGAATGCAAGTTTG
R:
AATTTCCGTTGCCCATGGTGA
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]