GgaEX1035315 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3511324-3544246:-
Coord C1 exon
chr4:3544071-3544246
Coord A exon
chr4:3519903-3520067
Coord C2 exon
chr4:3511324-3511524
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTTCCGTTCTGTTTTTCAGGGC
3' ss Score
12.14
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
ATATGGCTGTGAACGTTTCCCTGGTTCGTGATACAAAATGGCTGACGTTAGAAGTGTGTCGAGAGTTTCAGAGAGGTACTTGTTCTCGGTCTGATGCAGAGTGCAAGTTCGCCCACCCGTCACGGAGTTGCCATGTGGAAAATGGTCGAGTTATTGCCTGCTTTGACTCCCTAAAG
Seq A exon
GGCCGGTGTACCCGAGAGAACTGCAAATATCTCCACCCTCCCCCGCACTTAAAAACACAACTTGAAATAAATGGACGCAACAACCTGATCCAGCAAAAGACGGCCGCAGCCATGTTTGCTCAGCAAATGCAGTTCATGCTACCAGGCACGCAGCTACAGCCAATC
Seq C2 exon
ACGACATTTCCTGTGACTCCATCGCTTGCAACAAGCCCCACAATGGCTTTTAGTCCCTACCTGAGTCACGTTTCTCCTGGGATGGGCTTGGTTCCTGCAGAGCTTTTACCAAATACTCCTGTCCTGGTTTCTGGAAATCCAACTGTTACGGTACCAGGAAGCTCTGCTGGGCAGAAACTGATGCGTACGGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.155 A=0.699 C2=0.888
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGTTTCCCTGGTTCGTG
R:
CAAGCCCATCCCAGGAGAAAC
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]