GgaEX1035315 @ galGal4
Exon Skipping
Gene
ENSGALG00000029157 | MBNL3
Description
muscleblind-like 3 isoform 5 [Source:RefSeq peptide;Acc:NP_001156813]
Coordinates
chr4:3494022-3527002:-
Coord C1 exon
chr4:3526767-3527002
Coord A exon
chr4:3502601-3502765
Coord C2 exon
chr4:3494022-3494222
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTTCCGTTCTGTTTTTCAGGGC
3' ss Score
12.14
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
CGGCAGTAAATATTGCCCTGAAGAAGGGTGCGATTGCTTGCATTTTACTTTTTGTTTTTAATATGGCTGTGAACGTTTCCCTGGTTCGTGATACAAAATGGCTGACGTTAGAAGTGTGTCGAGAGTTTCAGAGAGGTACTTGTTCTCGGTCTGATGCAGAGTGCAAGTTCGCCCACCCGTCACGGAGTTGCCATGTGGAAAATGGTCGAGTTATTGCCTGCTTTGACTCCCTAAAG
Seq A exon
GGCCGGTGTACCCGAGAGAACTGCAAATATCTCCACCCTCCCCCGCACTTAAAAACACAACTTGAAATAAATGGACGCAACAACCTGATCCAGCAAAAGACGGCCGCAGCCATGTTTGCTCAGCAAATGCAGTTCATGCTACCAGGCACGCAGCTACAGCCAATC
Seq C2 exon
ACGACATTTCCTGTGACTCCATCGCTTGCAACAAGCCCCACAATGGCTTTTAGTCCCTACCTGAGTCACGTTTCTCCTGGGATGGGCTTGGTTCCTGCAGAGCTTTTACCAAATACTCCTGTCCTGGTTTCTGGAAATCCAACTGTTACGGTACCAGGAAGCTCTGCTGGGCAGAAACTGATGCGTACGGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
PF0064219=zf-CCCH=PU(4.0=1.8)
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
ENSGALT00000045882fB9278
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGTTTCCCTGGTTCGTG
R:
CAAGCCCATCCCAGGAGAAAC
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]