MmuEX6044331 @ mm10
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51131429-51164664:-
Coord C1 exon
chrX:51164418-51164664
Coord A exon
chrX:51139204-51139368
Coord C2 exon
chrX:51131429-51131620
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCTAAATTTTTTGCTACTAGGGT
3' ss Score
6.59
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
ATTCCTTGAACCATCTGCAGTCATATTATTCTCTGAAGAGGGTGCACTTGATTGCCAATTTGCTCTCAGTATGACACCTGTCAATGTAGCTCTAATCCGTGATACCAAGTGGCTGACTTTAGAAGTCTGTAGAGAATTTCAGAGAGGAACTTGCTCTCGAGCTGATGCAGAGTGCAGGTTTGCCCATCCGCCAAGAGTTTGCCATGTGGAAAATGGCCGAGTGGTGGCCTGTTTTGATTCACTAAAG
Seq A exon
GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCGCACTTAAAGTCGCAGCTAGAAGTTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCACATGCAACTCATGCTGCAGAACGCTCAGATGTCATCTCTT
Seq C2 exon
GCGTCTTTTCCTATGAATCCATCACTTGCAGCTAATCCTGCCATGGCTTTCAATCCTTACATGACTCATCCTGGCATGGGCCTGGTTCCTGCTGAGCTTTTACCAAATGGTCCGGTTCTGATTTCTGGAAACCCTCCTCTTGCACTGCCAGGAGTTCCTGGTCCAAAGCCAATTCGTACAGATAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-'8-14,'8-11,19-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.131 A=0.368 C2=0.891
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=42.4)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGATACCAAGTGGCTGAC
R:
AAAAGCTCAGCAGGAACCAGG
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types