BtaEX6008953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018253 | CHRNA1
Description
Bos taurus cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), mRNA. [Source:RefSeq mRNA;Acc:NM_176664]
Coordinates
chr2:22132562-22137231:+
Coord C1 exon
chr2:22132562-22132799
Coord A exon
chr2:22135402-22135625
Coord C2 exon
chr2:22136992-22137231
Length
224 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCTCGTTTCGTCCAGGAG
3' ss Score
8.35
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGAGCGACCAGCCAGACCTGAGCAACTTCATGGAGAGCGGAGAATGGGTGATCAAGGAGTCGCGGGGCTGGAAGCACTGGGTGTTCTATGCGTGCTGCCCCTCCACCCCCTACCTGGACATCACCTACCACTTCGTCATGCAGCGCCTGCCCCTCTACTTCATCGTCAACGTCATCATCCCCTGCCTGCTCTTCTCCTTCTTGACCGGCCTAGTGTTCTACCTGCCCACAGACTCAG
Seq A exon
GAGAGAAGATGACCCTCAGCATCTCTGTCTTGCTGTCCCTGACCGTGTTCCTTCTGGTCATCGTGGAGCTGATCCCTTCCACCTCCAGCGCTGTGCCCTTGATTGGGAAGTACATGCTGTTCACCATGGTGTTTGTCATCGCATCCATCATCATCACCGTCATCGTCATCAACACACACCACCGCTCCCCCAGCACCCATGTCATGCCCGAGTGGGTGCGGAAG
Seq C2 exon
GTTTTTATCGACACTATCCCAAATATCATGTTCTTCTCCACGATGAAAAGGCCATCCAGAGAAAAACAAGACAAAAAGATTTTCACAGAAGACATCGATATTTCTGACATTTCTGGAAAACCAGGGCCTCCACCAATGGGTTTCCACTCTCCCCTGATCAAACACCCCGAGGTGAAAAGTGCCATTGAGGGCATCAAATACATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018253-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(15.3=27.5)
A:
PF0293211=Neur_chan_memb=FE(51.4=100)
C2:
PF0293211=Neur_chan_memb=PD(31.9=57.5),PF0293211=Neur_chan_memb=PU(56.0=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCACTTCGTCATGCAGC
R:
AATGGCACTTTTCACCTCGGG
Band lengths:
300-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]