RnoEX6017440 @ rn6
Exon Skipping
Gene
ENSRNOG00000018286 | Chrna1
Description
cholinergic receptor nicotinic alpha 1 subunit [Source:RGD Symbol;Acc:69277]
Coordinates
chr3:60446806-60450868:-
Coord C1 exon
chr3:60450631-60450868
Coord A exon
chr3:60448181-60448404
Coord C2 exon
chr3:60446806-60447045
Length
224 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTTGTCTTTCTAGGGG
3' ss Score
12.44
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAAGTGACCAGCCCGACCTGAGTAACTTCATGGAGAGCGGAGAGTGGGTGATCAAGGAAGCCCGGGGCTGGAAGCACTGGGTGTTTTACTCCTGCTGCCCCAACACCCCTTATCTGGACATCACCTACCACTTCGTCATGCAGCGTCTGCCTCTCTACTTCATTGTCAACGTCATCATTCCCTGCCTGCTCTTCTCCTTCTTAACCAGTCTGGTGTTCTACCTGCCCACAGACTCAG
Seq A exon
GGGAGAAGATGACGCTGAGCATCTCTGTCTTACTGTCCCTGACTGTGTTCCTTCTCGTCATTGTGGAGCTGATCCCTTCCACCTCTAGCGCTGTACCCCTGATCGGGAAGTACATGTTGTTTACCATGGTCTTTGTCATTGCGTCCATAATAATCACCGTCATTGTCATCAACACACACCACCGTTCGCCCAGCACCCACATCATGCCCGAGTGGGTGCGGAAG
Seq C2 exon
GTTTTTATCGACACTATCCCAAACATCATGTTTTTCTCCACAATGAAAAGACCATCCAGAGATAAACAAGAAAAAAGGATTTTCACAGAAGACATAGATATCTCTGACATCTCTGGGAAGCCGGGGCCTCCACCTATGGGCTTTCATTCTCCACTGATCAAGCACCCTGAGGTGAAAAGCGCCATTGAGGGTGTGAAGTACATTGCAGAGACCATGAAGTCAGACCAGGAGTCTAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018286-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(15.3=27.5)
A:
PF0293211=Neur_chan_memb=FE(51.4=100)
C2:
PF0293211=Neur_chan_memb=PD(31.9=57.5),PF0293211=Neur_chan_memb=PU(52.2=45.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACACCCCTTATCTGGA
R:
AGGGTGCTTGATCAGTGGAGA
Band lengths:
308-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]