DreEX0021687 @ danRer10
Exon Skipping
Gene
ENSDARG00000009021 | chrna1
Description
cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
Coordinates
chr6:10581842-10584685:-
Coord C1 exon
chr6:10584448-10584685
Coord A exon
chr6:10582803-10583026
Coord C2 exon
chr6:10581842-10582081
Length
224 bp
Sequences
Splice sites
3' ss Seq
GTGCGTGTGTGTGTGTGTAGGTG
3' ss Score
8.77
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACAGCGACAGGCCGGACCTCAGTAATTTCATGGAGAGCGGCGAGTGGGTGATGAAGGACTACAGGAGCTGGAAACACTGGGTTTATTACGCTTGCTGTCCTGATACGCCATACCTTGACATCACATATCACTTCCTGCTGTTGCGTTTGCCACTCTACTTCATCGTGAACGTCATCATCCCCTGCATGCTGTTCTCCTTCCTCACCGGGCTTGTGTTTTACCTGCCCACAGACTCTG
Seq A exon
GTGAGAAGATGACCCTCAGCATCTCTGTCCTGCTCTCTCTGACTGTGTTCTTGCTGGTGATCGTCGAGTTGATCCCGTCCACCTCCAGTGCCGTTCCACTCATCGGCAAATACATGCTCTTCACCATGATCTTCGTCATCGCTTCCATCATAATCACTGTGATCGTCATCAACACACACCACCGCTCGCCCAGCACACACATCATGCCTGCCTGGGTCCGGAAG
Seq C2 exon
ATCTTCATCGACACCATTCCAAACATGATGTTTTTCTCCACCATGAAGCGACCCTCCCAGGAACGCCAGGAAAAGCGTCTCTTTCCCGCTGACTTTGACATCTCTGACATTTCAGGGAAACCCATGCCAGCCTCCGTCACTTACCACTCTCCCATAACCAAAAATCCCGATGTACGCAGTGCTATTGAGGGCGTCAAATACATCGCAGACACCATGAAGAGCGACGAGGAGTCCAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009021-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(10.5=27.5)
A:
PF0293211=Neur_chan_memb=FE(35.4=100)
C2:
PF0293211=Neur_chan_memb=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCCCCTGCATGCTGTT
R:
CTCGTCGCTCTTCATGGTGTC
Band lengths:
293-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]