GgaEX1015431 @ galGal4
Exon Skipping
Gene
ENSGALG00000009301 | CHRNA1
Description
Acetylcholine receptor subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P09479]
Coordinates
chr7:16307700-16310101:+
Coord C1 exon
chr7:16307700-16307937
Coord A exon
chr7:16308975-16309198
Coord C2 exon
chr7:16310078-16310101
Length
224 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTTTTGCATTGCAGGTG
3' ss Score
11.77
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGAGCGATCGCCCCGACCTGAGTAACTTCATGGAGAGCGGTGAGTGGGTGATGAAGGACTACCGTGGCTGGAAGCACTGGGTTTACTACGCCTGCTGCCCTGACACCCCCTACCTGGACATCACATACCACTTCCTCATGCAGCGCCTGCCTCTCTACTTCATCGTCAACGTCATCATCCCCTGCCTGCTCTTCTCCTTTCTGACCGGGTTTGTTTTTTATCTACCCACAGATTCAG
Seq A exon
GTGAGAAAATGACCCTCAGCATCTCTGTCTTGCTGTCACTGACTGTGTTCCTGCTGGTCATCGTGGAGCTGATTCCCTCTACCTCCAGCGCAGTGCCTCTGATAGGCAAATACATGTTGTTTACCATGGTGTTTGTCATCGCTTCCATCATCATCACCGTCATCGTCATCAACACCCACCACCGCTCCCCCAGCACTCACACCATGCCGCCCTGGGTCAGGAAG
Seq C2 exon
ATCTTTATTGACACCATCCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009301-'10-8,'10-6,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(21.0=27.5)
A:
PF0293211=Neur_chan_memb=FE(70.5=100)
C2:
PF0293211=Neur_chan_memb=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGATCGCCCCGAC
R:
GTTTGGGATGGTGTCAATAAAGA
Band lengths:
262-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]