MmuEX6102207 @ mm10
Exon Skipping
Gene
ENSMUSG00000027107 | Chrna1
Description
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87885]
Coordinates
chr2:73566702-73570644:-
Coord C1 exon
chr2:73570407-73570644
Coord A exon
chr2:73568092-73568315
Coord C2 exon
chr2:73566702-73566941
Length
224 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTGCCTTTCTAGGGG
3' ss Score
11.97
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAAGTGACCAGCCCGACCTGAGTAACTTCATGGAGAGCGGGGAGTGGGTGATCAAGGAAGCTCGGGGCTGGAAGCACTGGGTGTTCTACTCCTGCTGCCCCACCACTCCCTACCTGGACATCACCTACCACTTCGTCATGCAGCGCCTGCCCCTCTACTTCATTGTCAACGTCATCATTCCCTGCCTGCTCTTCTCCTTCTTAACCAGCCTGGTGTTCTACCTGCCCACAGACTCAG
Seq A exon
GGGAGAAGATGACGCTGAGCATCTCTGTCTTACTGTCCCTGACCGTGTTCCTTCTGGTCATTGTGGAGCTAATCCCTTCCACCTCCAGCGCTGTGCCCCTGATCGGGAAGTATATGTTGTTCACCATGGTCTTTGTCATTGCGTCCATCATCATCACCGTCATCGTCATCAACACACACCACCGTTCGCCCAGCACCCACATCATGCCCGAGTGGGTGCGGAAG
Seq C2 exon
GTTTTTATCGACACTATCCCAAACATCATGTTTTTCTCCACAATGAAAAGACCATCCAGAGATAAACAAGAGAAAAGGATTTTTACAGAAGACATAGATATATCTGACATCTCTGGGAAGCCGGGTCCTCCACCTATGGGCTTTCACTCTCCGCTGATCAAGCACCCTGAGGTGAAAAGCGCCATCGAGGGCGTGAAGTACATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027107-'7-10,'7-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(15.3=27.5)
A:
PF0293211=Neur_chan_memb=FE(51.4=100)
C2:
PF0293211=Neur_chan_memb=PD(31.9=57.5),PF0293211=Neur_chan_memb=PU(52.2=45.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACTCCCTACCTGGACAT
R:
GATCAGCGGAGAGTGAAAGCC
Band lengths:
296-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types