BtaEX6008954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018253 | CHRNA1
Description
Bos taurus cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), mRNA. [Source:RefSeq mRNA;Acc:NM_176664]
Coordinates
chr2:22129883-22135625:+
Coord C1 exon
chr2:22129883-22130078
Coord A exon
chr2:22132562-22132799
Coord C2 exon
chr2:22135402-22135625
Length
238 bp
Sequences
Splice sites
3' ss Seq
GTTTCACTCTGTCTTCTCAGGAG
3' ss Score
8.76
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGCAGATGGTGACTTTGCCATCGTCAAGTTCACCAAAGTGCTCCTGGACTACACTGGCCACATCACATGGACACCTCCTGCCATCTTTAAAAGCTACTGCGAGATCATCGTCACCCACTTTCCCTTTGACGAACAGAACTGCAGCATGAAGCTGGGCACCTGGACCTATGATGGCTCCGTGGTGGTCATCAACCCG
Seq A exon
GAGAGCGACCAGCCAGACCTGAGCAACTTCATGGAGAGCGGAGAATGGGTGATCAAGGAGTCGCGGGGCTGGAAGCACTGGGTGTTCTATGCGTGCTGCCCCTCCACCCCCTACCTGGACATCACCTACCACTTCGTCATGCAGCGCCTGCCCCTCTACTTCATCGTCAACGTCATCATCCCCTGCCTGCTCTTCTCCTTCTTGACCGGCCTAGTGTTCTACCTGCCCACAGACTCAG
Seq C2 exon
GAGAGAAGATGACCCTCAGCATCTCTGTCTTGCTGTCCCTGACCGTGTTCCTTCTGGTCATCGTGGAGCTGATCCCTTCCACCTCCAGCGCTGTGCCCTTGATTGGGAAGTACATGCTGTTCACCATGGTGTTTGTCATCGCATCCATCATCATCACCGTCATCGTCATCAACACACACCACCGCTCCCCCAGCACCCATGTCATGCCCGAGTGGGTGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018253-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(31.2=100)
A:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(15.3=27.5)
C2:
PF0293211=Neur_chan_memb=FE(51.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACATGGACACCTCCTGC
R:
ACGGTGATGATGATGGATGCG
Band lengths:
296-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]