DreEX6020741 @ danRer10
Exon Skipping
Gene
ENSDARG00000009021 | chrna1
Description
cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
Coordinates
chr6:10582803-10586259:-
Coord C1 exon
chr6:10586064-10586259
Coord A exon
chr6:10584448-10584685
Coord C2 exon
chr6:10582803-10583026
Length
238 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTGTGTCTGTGTAGGAC
3' ss Score
11.26
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGCTGATGGAGATTTTGCCATTGTTCACGAGACAAAGGTCTTGTTGGAGCACACCGGCATGATAACGTGGACTCCACCAGCGATCTTCAAGAGCTACTGTGAGATCGTGGTGCTTCACTTTCCCTTCGACCTGCAGAACTGCAGCATGAAACTGGGAACCTGGACCTATGATGGCAACCTTGTGATCATCAACCCA
Seq A exon
GACAGCGACAGGCCGGACCTCAGTAATTTCATGGAGAGCGGCGAGTGGGTGATGAAGGACTACAGGAGCTGGAAACACTGGGTTTATTACGCTTGCTGTCCTGATACGCCATACCTTGACATCACATATCACTTCCTGCTGTTGCGTTTGCCACTCTACTTCATCGTGAACGTCATCATCCCCTGCATGCTGTTCTCCTTCCTCACCGGGCTTGTGTTTTACCTGCCCACAGACTCTG
Seq C2 exon
GTGAGAAGATGACCCTCAGCATCTCTGTCCTGCTCTCTCTGACTGTGTTCTTGCTGGTGATCGTCGAGTTGATCCCGTCCACCTCCAGTGCCGTTCCACTCATCGGCAAATACATGCTCTTCACCATGATCTTCGTCATCGCTTCCATCATAATCACTGTGATCGTCATCAACACACACCACCGCTCGCCCAGCACACACATCATGCCTGCCTGGGTCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009021-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(31.2=100)
A:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(10.5=27.5)
C2:
PF0293211=Neur_chan_memb=FE(35.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGCGATCTTCAAGAGC
R:
GGTGGTGTGTGTTGATGACGA
Band lengths:
306-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]