MmuEX6102206 @ mm9
Exon Skipping
Gene
ENSMUSG00000027107 | Chrna1
Description
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87885]
Coordinates
chr2:73406149-73409665:-
Coord C1 exon
chr2:73409470-73409665
Coord A exon
chr2:73408464-73408701
Coord C2 exon
chr2:73406149-73406372
Length
238 bp
Sequences
Splice sites
3' ss Seq
GACCTTGTTTTGATTCTCAGGAA
3' ss Score
8.29
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGCAGACGGCGACTTTGCCATTGTCAAATTCACCAAGGTGCTCCTGGACTACACCGGCCACATCACCTGGACACCGCCAGCCATCTTTAAAAGCTACTGTGAGATCATTGTCACTCACTTTCCCTTCGATGAGCAGAACTGCAGCATGAAGCTGGGCACCTGGACCTATGACGGCTCTGTGGTGGCCATTAACCCG
Seq A exon
GAAAGTGACCAGCCCGACCTGAGTAACTTCATGGAGAGCGGGGAGTGGGTGATCAAGGAAGCTCGGGGCTGGAAGCACTGGGTGTTCTACTCCTGCTGCCCCACCACTCCCTACCTGGACATCACCTACCACTTCGTCATGCAGCGCCTGCCCCTCTACTTCATTGTCAACGTCATCATTCCCTGCCTGCTCTTCTCCTTCTTAACCAGCCTGGTGTTCTACCTGCCCACAGACTCAG
Seq C2 exon
GGGAGAAGATGACGCTGAGCATCTCTGTCTTACTGTCCCTGACCGTGTTCCTTCTGGTCATTGTGGAGCTAATCCCTTCCACCTCCAGCGCTGTGCCCCTGATCGGGAAGTATATGTTGTTCACCATGGTCTTTGTCATTGCGTCCATCATCATCACCGTCATCGTCATCAACACACACCACCGTTCGCCCAGCACCCACATCATGCCCGAGTGGGTGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027107-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(31.2=100)
A:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(15.3=27.5)
C2:
PF0293211=Neur_chan_memb=FE(51.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAGCCATCTTTAAAAGC
R:
ACGGTGGTGTGTGTTGATGAC
Band lengths:
308-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: