RnoEX6017439 @ rn6
Exon Skipping
Gene
ENSRNOG00000018286 | Chrna1
Description
cholinergic receptor nicotinic alpha 1 subunit [Source:RGD Symbol;Acc:69277]
Coordinates
chr3:60448181-60451549:-
Coord C1 exon
chr3:60451354-60451549
Coord A exon
chr3:60450631-60450868
Coord C2 exon
chr3:60448181-60448404
Length
238 bp
Sequences
Splice sites
3' ss Seq
AACCTTGTTTTGATTCTCAGGAA
3' ss Score
7.67
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCAGATGGAGACTTTGCCATTGTCAAATTCACCAAGGTGCTCCTGGACTACACCGGTCACATCACCTGGACCCCTCCAGCCATCTTTAAAAGCTACTGTGAGATCATTGTCACCCACTTTCCCTTCGATGAGCAGAACTGCAGCATGAAGCTGGGCACTTGGACCTATGACGGCTCTGTGGTGGCCATCAATCCG
Seq A exon
GAAAGTGACCAGCCCGACCTGAGTAACTTCATGGAGAGCGGAGAGTGGGTGATCAAGGAAGCCCGGGGCTGGAAGCACTGGGTGTTTTACTCCTGCTGCCCCAACACCCCTTATCTGGACATCACCTACCACTTCGTCATGCAGCGTCTGCCTCTCTACTTCATTGTCAACGTCATCATTCCCTGCCTGCTCTTCTCCTTCTTAACCAGTCTGGTGTTCTACCTGCCCACAGACTCAG
Seq C2 exon
GGGAGAAGATGACGCTGAGCATCTCTGTCTTACTGTCCCTGACTGTGTTCCTTCTCGTCATTGTGGAGCTGATCCCTTCCACCTCTAGCGCTGTACCCCTGATCGGGAAGTACATGTTGTTTACCATGGTCTTTGTCATTGCGTCCATAATAATCACCGTCATTGTCATCAACACACACCACCGTTCGCCCAGCACCCACATCATGCCCGAGTGGGTGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018286-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(31.2=100)
A:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(15.3=27.5)
C2:
PF0293211=Neur_chan_memb=FE(51.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACCGGTCACATCACCT
R:
TGGACGCAATGACAAAGACCA
Band lengths:
296-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]