GgaEX1015434 @ galGal4
Exon Skipping
Gene
ENSGALG00000009301 | CHRNA1
Description
Acetylcholine receptor subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P09479]
Coordinates
chr7:16306890-16309198:+
Coord C1 exon
chr7:16306890-16307085
Coord A exon
chr7:16307700-16307937
Coord C2 exon
chr7:16308975-16309198
Length
238 bp
Sequences
Splice sites
3' ss Seq
GTGGGTTTATTTGCTGTCAGGAG
3' ss Score
3.52
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TGCAGATGGCGATTTTGCCATTGTTAAATACACCAAGGTCCTTCTGGAACACACAGGAAAAATCACCTGGACGCCTCCTGCTATCTTTAAAAGTTACTGTGAAATTATAGTCACGTACTTCCCATTCGATCAGCAGAACTGTAGCATGAAGCTGGGAACGTGGACGTATGACGGTACAATGGTGGTTATCAACCCG
Seq A exon
GAGAGCGATCGCCCCGACCTGAGTAACTTCATGGAGAGCGGTGAGTGGGTGATGAAGGACTACCGTGGCTGGAAGCACTGGGTTTACTACGCCTGCTGCCCTGACACCCCCTACCTGGACATCACATACCACTTCCTCATGCAGCGCCTGCCTCTCTACTTCATCGTCAACGTCATCATCCCCTGCCTGCTCTTCTCCTTTCTGACCGGGTTTGTTTTTTATCTACCCACAGATTCAG
Seq C2 exon
GTGAGAAAATGACCCTCAGCATCTCTGTCTTGCTGTCACTGACTGTGTTCCTGCTGGTCATCGTGGAGCTGATTCCCTCTACCTCCAGCGCAGTGCCTCTGATAGGCAAATACATGTTGTTTACCATGGTGTTTGTCATCGCTTCCATCATCATCACCGTCATCGTCATCAACACCCACCACCGCTCCCCCAGCACTCACACCATGCCGCCCTGGGTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009301-'9-6,'9-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(31.2=100)
A:
PF0293118=Neur_chan_LBD=PD(24.0=62.5),PF0293211=Neur_chan_memb=PU(21.0=27.5)
C2:
PF0293211=Neur_chan_memb=FE(70.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATCACCTGGACGCCTCC
R:
ACGGTGATGATGATGGAAGCG
Band lengths:
299-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]