BtaEX6009172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26384692-26403762:-
Coord C1 exon
chr2:26403677-26403762
Coord A exon
chr2:26387312-26387417
Coord C2 exon
chr2:26384692-26384795
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCAATTTATTTAGATC
3' ss Score
9.06
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AACCAACTTGGAACTTGAATTAATTCATCGAGGAGGGAATTTATGTTCAGGTGGTGCAAGTACAGCTGGTAAAAGGTCCTGTTTAA
Seq A exon
ATCAGCTGTTCCATGTATTAGCCTTGCACATGCGACTTTATAGCATTGATTCTGAGTATAATCCTTGGAGAAAGCTCACACAGTTACTAGAAGAGATGAGTTCGCA
Seq C2 exon
ACTGGGAAATGAGGAACAACAGCCTGAGGTTCCAATTCTTTATCATGATGTTACATCCCTTTTGCTCATCCAGATCTTAATGATGCCTCAACCCTTACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-'40-41,'40-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACTTGGAACTTGAATTAATTCA
R:
TGTGTAAGGGTTGAGGCATCA
Band lengths:
186-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]