GgaEX1061828 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:19955786-19971634:-
Coord C1 exon
chr7:19971549-19971634
Coord A exon
chr7:19963006-19963111
Coord C2 exon
chr7:19955786-19955886
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCTCCACCCCTCAGATC
3' ss Score
10.2
5' ss Seq
AGAGCAAGT
5' ss Score
1.6
Exon sequences
Seq C1 exon
AACAAACCTGGAACTTGAGCTCGTCCATCGGGGTGGCAATTTGTGCTCAGGAGGTGCAAGCACAGCTGGAAAAAGATCATGTTTAA
Seq A exon
ATCAGCTGTTCCATGTGTTGGCCATGCACATGCGCCTCTACAGTATTGACTCTGCATACAATCCCTGGAGGAAACTAACCCAGACGATGCAAGATAAAAATTCAGA
Seq C2 exon
GCTGATAAGTGAAGAGCTGCCAGAAGTTCCTGTACTTTACAGAGATGTCTCGTCCCTTTTGCTAATCCAGATTTTAACCATGCCCCAACCATTGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608-'9-8,'9-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCTGGAACTTGAGCTCG
R:
CTTTGTGCAATGGTTGGGGCA
Band lengths:
186-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]