GgaEX1061828 @ galGal4
Exon Skipping
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:17992598-18008446:-
Coord C1 exon
chr7:18008361-18008446
Coord A exon
chr7:17999818-17999923
Coord C2 exon
chr7:17992598-17992698
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCTCCACCCCTCAGATC
3' ss Score
10.2
5' ss Seq
AGAGCAAGT
5' ss Score
1.6
Exon sequences
Seq C1 exon
AACAAACCTGGAACTTGAGCTCGTCCATCGGGGTGGCAATTTGTGCTCAGGAGGTGCAAGCACAGCTGGAAAAAGATCATGTTTAA
Seq A exon
ATCAGCTGTTCCATGTGTTGGCCATGCACATGCGCCTCTACAGTATTGACTCTGCATACAATCCCTGGAGGAAACTAACCCAGACGATGCAAGATAAAAATTCAGA
Seq C2 exon
GCTGATAAGTGAAGAGCTGCCAGAAGTTCCTGTACTTTACAGAGATGTCTCGTCCCTTTTGCTAATCCAGATTTTAACCATGCCCCAACCATTGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015660fB13430
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCTGGAACTTGAGCTCG
R:
CTTTGTGCAATGGTTGGGGCA
Band lengths:
186-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]