MmuEX0050347 @ mm10
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:70000458-70009206:+
Coord C1 exon
chr2:70000458-70000543
Coord A exon
chr2:70003354-70003459
Coord C2 exon
chr2:70009103-70009206
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCCAATTCATTTAGATC
3' ss Score
7.63
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AACCAATCTGGAGCTGGAACTGATTCATAGAGGAGGCAGTCTCTGCTCCGGTGGTCCAAGCACAGCGGGGAAAAGATCTTGTCTGA
Seq A exon
ATCAGCTGTTCCATGTATTAGCCTTGCACATGCGGCTTTATACCATTGATTCTGAATATAATCCATGGAAAAAACTCACCCAGTTAGTGGAAGATATGAATTCACA
Seq C2 exon
GGTGGGGAATGAAGACCAGCAGCCAGAAGTTCCAATTCTTTATCATGATGTGACATCCCTTCTGCTCATCCAGATCTTAATGATGCCACAACCCTTACGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAATCTGGAGCTGGAACTG
R:
ACGTAAGGGTTGTGGCATCAT
Band lengths:
186-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types