DreEX0083001 @ danRer10
Exon Skipping
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3944429-3956478:-
Coord C1 exon
chr9:3956393-3956478
Coord A exon
chr9:3949477-3949582
Coord C2 exon
chr9:3944429-3944529
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTCTCTGTGTTTCAGATC
3' ss Score
12.42
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
AACAAATCTGGAGCTTGAGTTGGTTCATCGTGGTGGGAATCTATGCAGTGGAGGGGCCAGTGCAGCTGCCAAACGCTCCTGTCTCA
Seq A exon
ATCAGCTGTTTCACGTGCTGGCCATGCACATGCGGCTCTACAGCATAGACTCGGCATACAATCCATGGACCAGACTCACACTGAGCACGCAAAGCAGAGAGAATGA
Seq C2 exon
GTACTGTGATGAAGAGCGTCCTGAGGTTCCCATGCTTTTCCGAGACGTCCCATCCCTCCTAATCATCTTCATCCTCACCATGCCTCAGCCTTTACGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508-'16-19,'16-16,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATCTGGAGCTTGAGTTGGT
R:
CTTTGCGTAAAGGCTGAGGCA
Band lengths:
186-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]