RnoEX0096082 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56248980-56259928:+
Coord C1 exon
chr3:56248980-56249065
Coord A exon
chr3:56252270-56252375
Coord C2 exon
chr3:56259825-56259928
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCCCCTTCATTTAGATC
3' ss Score
8.66
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AACCAATTTAGAGCTGGAGCTGATTCACAGAGGAGGCAGCCTGTGCTCAGGCGGTGCAAGCACGGCTGGGAAGAGGTCTTGTTTGA
Seq A exon
ATCAGCTGTTCCATGTATTAGCCTTGCACATGCGGCTTTATACCATTGACTCTGAGTATAATCCATGGAAAAAACTCACCCACTTAGTGGAAGATATGAATTCACA
Seq C2 exon
GGTGGGGAGTGAAGACCAGCAGCCTGAAGTTCCAGTCCTTTATCATGATGTGACATCGCTCCTGCTCATCCAGATCTTAATGATGCCACAGCCCTTACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-'57-61,'57-58,58-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCACAGAGGAGGCAGCC
R:
CTTTCTGTAAGGGCTGTGGCA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]