HsaEX6016616 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170871791-170897495:+
Coord C1 exon
chr2:170871791-170871876
Coord A exon
chr2:170885856-170885958
Coord C2 exon
chr2:170897392-170897495
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTCAATTTTTTCAGATC
3' ss Score
11.2
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AACCAATTTAGAACTTGAATTGATTCATCGAGGAGGCAATTTGTGTTCAGGTGGTGCAAGCACAGCTGGCAAAAGGTCTTGTTTAA
Seq A exon
ATCAGCTGTTTCATGTATTAGCCTTGCACATGCGGCTTTATAGCATTGACTCTGAGTATAATCCCTGGAGAAAGCTCACCCAGTTAGAAGAGATGAATCCACA
Seq C2 exon
GCTGGGATATGAAGAACAACAGCCTGAGGTTCCAATTCTTTATCATGATGTAACATCCCTTTTGCTCATCCAGATCTTAATGATGCCACAACCCTTACGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-'43-51,'43-49,47-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAATTGATTCATCGAGGAGGC
R:
CTTTGCGTAAGGGTTGTGGCA
Band lengths:
178-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)