Special

BtaEX6014132 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus spectrin, alpha, erythrocytic 1 (elliptocytosis 2) (SPTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206588]
Coordinates
chr3:11180430-11186125:+
Coord C1 exon
chr3:11180430-11180534
Coord A exon
chr3:11181978-11182186
Coord C2 exon
chr3:11186005-11186125
Length
209 bp
Sequences
Splice sites
3' ss Seq
AGGACACTTGGGCTTTCTAGGAT
3' ss Score
4.51
5' ss Seq
AGCGTATGT
5' ss Score
6.12
Exon sequences
Seq C1 exon
GCAGAGACACTGCTGACCATGAAGGATCAGGCCAGGGATCTGGCTTCAGCAGGAAACTTGCTCAAGAAACATCAGCTACTGGAAACAGAGATGTTGGCTAGACAG
Seq A exon
GATGCACTCCAGGACCTGAACACATTGGCTACAGATCTGATCTCCAGTGGAACTTTCAATACTGACCAGATTGTGGAGAAAAGGGATAATGTCAACGAGCGCTTTCTGAATGTCAAGGAATTGGCGGCTGAGCATCATGAGAAACTGAAAGAGTCATATGCCTTGTTCCAGTTCTTCCAGGACCTAGATGATGAAGAGTTCTGGATAGC
Seq C2 exon
GGAGAAGTTGGTACGAGTGAGATCCCAGGACTATGGGAGGGATCTGCAGGGGGTTCAGAATTTGCTGAAGAAGCACAGACGCCTAGAAGGGGAGCTGCTGGCACATGAACCTGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000888-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGCTGACCATGAAGGA
R:
CTGGATGGCAGGTTCATGTGC
Band lengths:
221-430
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]