RnoEX6045468 @ rn6
Exon Skipping
Gene
ENSRNOG00000003537 | Spta1
Description
spectrin, alpha, erythrocytic 1 [Source:RGD Symbol;Acc:1305194]
Coordinates
chr13:92303338-92306276:+
Coord C1 exon
chr13:92303338-92303442
Coord A exon
chr13:92304348-92304556
Coord C2 exon
chr13:92306156-92306276
Length
209 bp
Sequences
Splice sites
3' ss Seq
AAACACACTGGATTTTCTAGGAC
3' ss Score
5.46
5' ss Seq
AGAGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCAGAAGGCTTGCTGGCCATGAAGGATCAGGCCAGGGACTTAACTTCAGCAGGAAACCTACTTAAGAAGCATCAGCTATTGGAAGCAGAGATGTTGGCACGAGAG
Seq A exon
GACCCTCTCAAAGATCTGAATGGTCTGGCTAAGGAGCTGATCTCCAGTGGGACTTTCAACATTGAGCAGATAGAAGAGAAAATGAATGGTGTCAATGAGCGTTTCAAAAATGTCCAGAGTTTGGCAGCTGCACACCATGAGAAACTGAAAGAGACCTATGCCTTATTCCAGTTCTTCCAAGACCTGGATGATGAGGAAGCCTGGATAGA
Seq C2 exon
GGAGAAGTTGCTACGAGTGAGCTCCCAGGACTGTGGGAGGGATCTTCAGAGTGTTCAGAACTTACTGAAAAAACACAGACGCCTAGAGGGGGAGCTGGTGGCACATGAACCTGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003537-'35-40,'35-39,36-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGCCATGAAGGATCAG
R:
CTGGACAGCAGGTTCATGTGC
Band lengths:
217-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]