MmuEX6029389 @ mm9
Exon Skipping
Gene
ENSMUSG00000026532 | Spna1
Description
spectrin alpha 1 [Source:MGI Symbol;Acc:MGI:98385]
Coordinates
chr1:176148855-176152830:+
Coord C1 exon
chr1:176148855-176148959
Coord A exon
chr1:176149897-176150105
Coord C2 exon
chr1:176152710-176152830
Length
209 bp
Sequences
Splice sites
3' ss Seq
AAACACACTGGATTTTCTAGGAC
3' ss Score
5.46
5' ss Seq
AGAGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCAGAAGGCTTGTTGGCCATGAAGGATCAGGCCAGGGACTTAACTTCAGCAGGAAACCTACTTAAGAAGCATCAGCTATTGGAAGCAGAGATGTTGGCACGAGAG
Seq A exon
GACCCTCTCAAAGATCTGAATGACCTGGCTCAGGAGCTGATCTCCAGTGGGACTTTCAACATTGACCAGATAGAAGAGAAAATGAATGGTGTCAATGAGCGCTTTGAAAATGTCCAGAGCTTGGCAGCTGCACACCACGAGAAGCTGAAAGAGACGTATGCCTTGTTCCAGTTCTTCCAAGACCTGGATGATGAGGAAGCCTGGATAGA
Seq C2 exon
GGAGAAGTTGTTACGAGTGAGCTCCCAGGACTATGGGAGGGATCTTCAGAGTGTTCAGAACTTATTGAAAAAACACAAACGCCTAGAGGGGGAGCTAGTGGCACATGAACCTGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026532-'34-37,'34-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCATGAAGGATCAGGC
R:
CTGGACAGCAGGTTCATGTGC
Band lengths:
215-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: