MmuEX6029389 @ mm10
Exon Skipping
Gene
ENSMUSG00000026532 | Spta1
Description
spectrin alpha, erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98385]
Coordinates
chr1:174218724-174222699:+
Coord C1 exon
chr1:174218724-174218828
Coord A exon
chr1:174219766-174219974
Coord C2 exon
chr1:174222579-174222699
Length
209 bp
Sequences
Splice sites
3' ss Seq
AAACACACTGGATTTTCTAGGAC
3' ss Score
5.46
5' ss Seq
AGAGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCAGAAGGCTTGTTGGCCATGAAGGATCAGGCCAGGGACTTAACTTCAGCAGGAAACCTACTTAAGAAGCATCAGCTATTGGAAGCAGAGATGTTGGCACGAGAG
Seq A exon
GACCCTCTCAAAGATCTGAATGACCTGGCTCAGGAGCTGATCTCCAGTGGGACTTTCAACATTGACCAGATAGAAGAGAAAATGAATGGTGTCAATGAGCGCTTTGAAAATGTCCAGAGCTTGGCAGCTGCACACCACGAGAAGCTGAAAGAGACGTATGCCTTGTTCCAGTTCTTCCAAGACCTGGATGATGAGGAAGCCTGGATAGA
Seq C2 exon
GGAGAAGTTGTTACGAGTGAGCTCCCAGGACTATGGGAGGGATCTTCAGAGTGTTCAGAACTTATTGAAAAAACACAAACGCCTAGAGGGGGAGCTAGTGGCACATGAACCTGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026532-'31-47,'31-43,39-47=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCATGAAGGATCAGGC
R:
CTGGACAGCAGGTTCATGTGC
Band lengths:
215-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types