BtaEX6015142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19858780-19860041:-
Coord C1 exon
chr3:19859916-19860041
Coord A exon
chr3:19859534-19859735
Coord C2 exon
chr3:19858780-19858853
Length
202 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCGTTTGACTCAGGGT
3' ss Score
8.9
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAACCTTGAGTCAGATGCCTGGAGAATTGAGCAAAGATGGTGACTTGGTCGTCAACATGCGCATCCTTGGCAAAAAAAGAACTAAGACGTGGCACAAAGGCACCCTTATTGCCATCCAGACAGTTG
Seq A exon
GGTCAGGGAAGAAGTACAAGGTGAAATTTGACAACAAAGGAAAGAGTCTTCTGTCAGGAAACCACATTGCCTACGATTACCACCCTCCTGCTGACAAGTTGTATGTGGGCAGTCGAGTAGTGGCCAAATACAAAGATGGGAATCAGGTCTGGCTCTATGCTGGCATTGTAGCTGAGACACCAAACGTCAAAAACAAGCTCAG
Seq C2 exon
GTTTCTCATTTTCTTTGATGATGGCTATGCTTCCTATGTGACACAGTCTGAACTGTATCCCATTTGCCGGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'18-12,'18-11,20-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(19.4=55.8)
A:
PF150571=DUF4537=FE(54.0=100)
C2:
PF150571=DUF4537=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTGAGTCAGATGCCTGG
R:
GCCGGCAAATGGGATACAGTT
Band lengths:
196-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]