DreEX6040646 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22103195-22104208:-
Coord C1 exon
chr16:22103914-22104208
Coord A exon
chr16:22103340-22103541
Coord C2 exon
chr16:22103195-22103268
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTATTAACTTTTTTAAACAGGCA
3' ss Score
9.27
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTTAAGGAGGCTTCAGCTGCCCTTCAAAGAACATCTCAGCAGGTGCAGAACCTGGCTCAGACTGTCAACAGAACGGCCCAATCAGGGGTCACTACACCAGTTAAAACAGGGGGCCCTCCCGGACAAGGTCCTCTAGCTGTTCCAGCAGTGTTTATGTCCTCAGCCCCAAGAAACACGCCCACTCAACCAAACCCTAATATAAAACAGGACAGTATCAAGATAAACATGACGCTTTTGGGTAAAAAACGAACCAAGACGTGGCATCGTGGAACACTTGTTGCCATCAAACAAGTGG
Seq A exon
GCAACAATCTTAAGTACAAAGTCAGGTTTGAAAATAAGGGGAAGAGTCTTCTCTCTGGGAACCATGTGGCCTTTGAGTACCACCCAACACTAGAGAGACTGTTTGTTGGAGCCCGAGTTGTTGCCAGGTACAAGGATGGTAATCAAGTCTGGCTGTATGCAGGCGTAGTCGCTGAGATGCCCAACAGCAAGAACCGTATGAG
Seq C2 exon
GTTCCTGATCTTTTTTGATGATGGTTATGCCTCATATGTGGGCTTGCCTGAGCTCTACCCTATCTGCAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(17.6=21.2)
A:
PF150571=DUF4537=FE(56.3=100)
C2:
PF150571=DUF4537=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGGCTCAGACTGTCA
R:
CAGGCAAGCCCACATATGAGG
Band lengths:
299-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]