GgaEX1004449 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1734095-1736850:+
Coord C1 exon
chr25:1734095-1734194
Coord A exon
chr25:1734869-1735070
Coord C2 exon
chr25:1736660-1736850
Length
202 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGAAACATCTTCCAGGTG
3' ss Score
7.95
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
CTGCGGGAAGCCATGGCAGCAATGAGAAGGTCTGCCCAGGATGTTCAGAAATTTATGGATGCTGTGCACAGGAGAACGAACGCCCAGGATGCACTGAAAG
Seq A exon
GTGCTGGTAAGAAGTACAAAGTGAAGTTTGACAATAAGGGGAAGAGTTTGCTTTCTGGCAATCACATTGCTTACGACTACCACCCCTCCCCAGACAAACACTACGTTGGGAGCAGAGTTGTGGCAAAATACAAAGATGGGGATCAAGTTTGGCTGTATGCTGGCATAGTGGCCGAAACCCCAAACGTGAAGAACAAAGACAG
Seq C2 exon
TTAAGAAGACGTGGGAGGACATAGAGGACGTGTCGTGCCGGGACTTCATTGAGGAGTACATCAGTGCATACCCCAACCGTCCCATGGTGCTGCTGAAGAATGGCCAGCTGATCAAAACCGAGTGGGAGGGGACCTGGTGGAAATCCAGGGTGGAAGAAGTGGACAGCAGTCTGGTCAAAATCCTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051_MULTIEX3-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF150571=DUF4537=FE(54.0=100)
C2:
PF150571=DUF4537=PD(5.6=10.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCATGGCAGCAATGAGAA
R:
CAGGAAGAGGATTTTGACCAGACT
Band lengths:
284-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]