MmuEX6072543 @ mm10
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95345526-95347121:-
Coord C1 exon
chr3:95346996-95347121
Coord A exon
chr3:95346615-95346816
Coord C2 exon
chr3:95345526-95345599
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCTTTTATACAGGGC
3' ss Score
10.33
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAACCTTGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGACCTGATAGTCAGCATGCGGATTCTGGGCAAGAAGAGGACTAAGACATGGCACAAAGGCACCCTTATTGCCATCCAGACTGTTG
Seq A exon
GGCTAGGAAAAAAATACAAAGTGAAATTTGACAACAAAGGAAAGAGTCTGCTATCTGGGAACCATATTGCCTATGATTACCACCCTCCCGCTGACAAGCTGTTTGTGGGCAGTCGAGTGGTGGCCAAGTACAAAGATGGAAATCAGGTCTGGCTTTATGCTGGCATTGTAGCTGAGACCCCTAACGTCAAGAACAAGCTCAG
Seq C2 exon
ATTTTTAATTTTTTTTGATGATGGCTATGCTTCCTATGTCACTCAGTCAGAGCTTTATCCCATTTGCCGACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'12-12,'12-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(17.4=48.8)
A:
PF150571=DUF4537=FE(55.4=100)
C2:
PF150571=DUF4537=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTTGGGTCAGGTGTCTG
R:
GGTCGGCAAATGGGATAAAGC
Band lengths:
198-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types