RnoEX0079916 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196514255-196515665:-
Coord C1 exon
chr2:196515540-196515665
Coord A exon
chr2:196515137-196515338
Coord C2 exon
chr2:196514255-196514328
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTCTTTTATACAGGGC
3' ss Score
10.14
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAACCTTGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGACCTGATAGTCAGCATGCGGATTCTGGGCAAGAAGAGGACTAAGACGTGGCACAAAGGCACCCTCATTGCCATCCAGACTGTCG
Seq A exon
GGCTAGGAAAGAAATACAAAGTGAAATTTGACAACAAAGGAAAGAGTCTGCTGTCTGGGAACCATATTGCCTATGATTACCACCCTCCTGCTGACAAGCTGTTTGTGGGCAGTCGAGTGGTGGCCAAATACAAAGATGGAAATCAGGTCTGGCTTTATGCTGGCATTGTAGCTGAGACCCCTAACGTCAAGAACAAGCTCAG
Seq C2 exon
ATTTTTAATTTTTTTTGATGATGGCTATGCTTCCTATGTCACTCAGTCCGAGCTGTATCCCATTTGCCGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(17.4=48.8)
A:
PF150571=DUF4537=FE(55.4=100)
C2:
PF150571=DUF4537=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTTGGGTCAGGTGTCTG
R:
GTCGGCAAATGGGATACAGCT
Band lengths:
197-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]