BtaEX6016517 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49607234-49616737:+
Coord C1 exon
chr3:49607234-49607456
Coord A exon
chr3:49614443-49614664
Coord C2 exon
chr3:49616533-49616737
Length
222 bp
Sequences
Splice sites
3' ss Seq
AGTGGCCACTTTGGTTTCAGCAT
3' ss Score
5.99
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
TTTTATGATCATCCTGAACCGCTGTTTCCCTATCTTCATGGTGCTGGCCTGGATCTACTCTGTCTCCATGACTGTAAAGAGCATTGTCTTGGAGAAGGAGTTGAGACTGAAGGAAACCTTGAAAAATCAGGGTGTCTCCAACAGGGTGATTTGGTGTACCTGGTTCCTGGACAGCTTCTCTATCATGTCGATGAGCATCTGCCTGCTGACAATATTCATCATG
Seq A exon
CATGGAAGGATCCTGCATTACAGCAATCCGTTCATCCTCTTCCTGTTCCTGTTGGCTTTCTCCATTGCTACGATCATGCAGTGCTTCCTGCTCAGCACCTTCTTCTCCAGGGCCAGTCTGGCAGCAGCCTGCAGTGGTGTCATCTACTTCACCCTCTACCTGCCACACATTCTCTGCTTCGCTTGGCAGGACCGAATTACAGCCGACATGAAGATGGCTGTG
Seq C2 exon
AGCCTGCTGTCTCCTGTGGCATTTGGGTTTGGCACTGAGTACCTGGCTCGTTTTGAAGAGCAAGGTGTGGGGCTGCAGTGGAGCAATATTGGGAACAGTCCCATGGAAGGGGATGAATTCAGTTTTCTGATGTCCATGAAGATGATGCTCCTTGATGCTGCTCTGTATGGCTTGCTTGCCTGGTATCTTGACCAGGTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(26.1=100)
A:
PF126982=ABC2_membrane_3=FE(25.7=100)
C2:
PF126982=ABC2_membrane_3=PD(21.5=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAACCGCTGTTTCCCTA
R:
AATATTGCTCCACTGCAGCCC
Band lengths:
302-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]