DreEX0009932 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28524337-28529291:+
Coord C1 exon
chr24:28524337-28524559
Coord A exon
chr24:28526771-28526992
Coord C2 exon
chr24:28529087-28529291
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCATCTTTGTTTTCTCACAGGGA
3' ss Score
9.73
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTCATGCTGACCCTGAACCGTTGCTTTCCGATCTTCATGGTTCTGGCCTGGGTTTACTCTGTGTCGATGACGGTGAAGAGCATCGTGCTGGAGAAGGAGATGAGGCTGAAGGAGACCCTGAAGGCCATGGGCGTCACAAACCGCGTGCTCTGGTGCACGTGGTTTATTGACACCTTCTTCATGATGGCCTCCAGCACAGCCCTGCTCACTCTTATCATCATG
Seq A exon
GGAGGAAAAGTGCTGAACTACAGCAATCCCATCATCCTCTTCCTCTTCCTGCTCACTTTCACCACAGCAACCATCATGCAGTGCTTCCTCATGAGTGTGTTTTTTAATAAGGCCAATCTGGCGGCGGCCTGCAGTGGCATCATTTACTTCACCCTGTACCTGCCGCATGTAGTCTGCTTCGCCTGGCAGGACCGCATTACCAAAGACATGAAAATCATGGCG
Seq C2 exon
AGTCTGATGTCCCAGGTTGCGTTTGGCTTTGGAACGGAGTATCTGTCTCGGTATGAAGAGCAGGGCCTCGGCCTGCAGTGGGATAACATCCAAACCAGTCTCCTGGAGGGTGACGAGTTTTCTTTTCTCAACTCCATCATCATGATGGCAGTGGATACAGTTCTGTATGGCGTTCTCGCCTGGTATCTCGATAGCGTCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(33.2=100)
A:
PF126982=ABC2_membrane_3=FE(32.7=100)
C2:
PF126982=ABC2_membrane_3=PD(27.4=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGTTTACTCTGTGTCG
R:
AAAACTCGTCACCCTCCAGGA
Band lengths:
298-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]