MmuEX6073817 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121808226-121815488:+
Coord C1 exon
chr3:121808226-121808448
Coord A exon
chr3:121813380-121813601
Coord C2 exon
chr3:121815284-121815488
Length
222 bp
Sequences
Splice sites
3' ss Seq
CGTGATCCCTTTGGTTTCAGCAT
3' ss Score
7.13
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CTTCATGATCATCCTGAATCGCTGTTTCCCTATCTTCATGGTGCTGGCGTGGATCTACTCTGTCTCCATGACCGTTAAGGGCATTGTTTTGGAGAAGGAGCTGAGGCTGAAGGAGACCTTGAAAAACCAAGGCGTCTCTAATGCTGTCATCTGGTGTACCTGGTTCCTGGATAGCTTCTCCATCATGGCGCTGAGTATCTTCCTCCTGACGCTGTTCATCATG
Seq A exon
CATGGAAGGATCCTCCATTACAGCGATCCCTTCATTCTCTTCCTGTTCTTGTTGGCCTTTGCCACTGCGACCATCATGCAGAGCTTCCTGCTCAGTACTTTGTTTTCCAAGGCCAGCCTTGCAGCAGCCTGCAGTGGGGTCATCTACTTCACCCTCTACCTACCACACGTTCTGTGCTTTGCCTGGCAGGACCGGATGACGGCCGACCTGAAGACGACTGTG
Seq C2 exon
AGCCTACTTTCTTCCGTGGCATTTGGGTTTGGCACCGAGTACCTGGTCCGCTTTGAGGAGCAAGGCCTGGGGCTGCAATGGAGCAACATTGGGAAGAGTCCCCTGGAAGGGGATGAGTTCAGTTTCCTGCTGTCTATGAAGATGATGCTTCTCGATGCTGCTCTCTACGGCTTGCTTGCTTGGTATCTTGACCAGGTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'18-20,'18-18,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(26.0=100)
A:
PF126982=ABC2_membrane_3=FE(25.6=100)
C2:
PF126982=ABC2_membrane_3=PD(21.4=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTGAAGGAGACCTTGA
R:
TACCAAGCAAGCAAGCCGTAG
Band lengths:
307-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: