RnoEX6011365 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225709948-225716869:+
Coord C1 exon
chr2:225709948-225710170
Coord A exon
chr2:225714665-225714886
Coord C2 exon
chr2:225716665-225716869
Length
222 bp
Sequences
Splice sites
3' ss Seq
CGTGATCTCTTTGGTTTCAGCAC
3' ss Score
7.85
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CTTCATGATCATCCTGAATCGCTGTTTCCCCATCTTCATGGTGCTGGCATGGATCTACTCTGTCTCCATGACTGTTAAGGGCATTGTCTTGGAAAAGGAGCTGAGGCTGAAGGAGACCTTGAAGAACCAAGGTGTCTCTAACGCTGTGATTTGGTGTACTTGGTTCCTGGACAGCTTCTCCATTATGTCAATGAGTATCTTCCTCCTGACGCTGTTCATCATG
Seq A exon
CACGGGAGAATTCTCCATTACAGCGATCCCTTCATTCTCTTCCTGTTCCTATTGGCCTTTGCCACCGCGACCATCATGCAGTGCTTCCTGTTCAGTACTTTCTTTTCCAAGGCCAGCCTCGCCGCAGCCTGCAGCGGGGTCATCTACTTCACCCTCTACCTGCCACACATTCTGTGCTTTGCGTGGCAAGACCGGATGACCGCCGACCTGAAGACCACTGTG
Seq C2 exon
AGCCTGCTTTCTCCGGTGGCATTTGGGTTTGGCACCGAGTACCTGGTCCGCTTTGAAGAGCAAGGCCTGGGACTGCAGTGGAGCAACATTGGGAAGAGTCCCCTGGAAGGGGATGAGTTCAGTTTCCTGTTGTCTATGAAGATGATGCTCCTCGATGCTGCTCTGTACGGCTTGCTTGCTTGGTATCTTGACCAGGTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(22.4=100)
A:
PF126982=ABC2_membrane_3=FE(22.1=100)
C2:
PF126982=ABC2_membrane_3=PD(18.4=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAATCGCTGTTTCCCCAT
R:
AATGTTGCTCCACTGCAGTCC
Band lengths:
301-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]